Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEPFRNIGIIGRLGSTQVLDTIRRLKKFLIDR--HLHVILEDTIAEVLPG-HG------------LQTCSRKIMGEICDLVVVVGGDGSMLGAARALAR-HKVPVLGINRGSLGFLTDIRPDELEAKVGEVLDGQYIVESRFLLDAQVRRGI-DSMGQGDALNDVVLHPGKSTRMIEFELYIDGQFVCSQKADGLIVATPTGSTAYALSAGGPIMHPKLDAIVIVPMYPHMLSSRPIVVDGNSELKIVVSPNM-----QIYPQVSCDGQNHFTCAPGDTVTISKKPQ-------KL-----RLIHPIDHNYYEICRTKLGWGSRLGGGD |
3AFO Chain:A ((40-381)) | --PLQNVYITKKPWTPSTREAMVEFITHLHESYPEVNVIVQPDVAEEISQDFKSPLENDPNRPHILYTGPEQDIVNRTDLLVTLGGDGTILHGVSMFGNTQVPPVLAFALGTLGFLSPFDFKEHKKVFQEVISSRAKCLHRTRLECHLKKKDSNSSIVTHAMNDIFLHRGNSPHLTNLDIFIDGEFLTRTTADGVALATPTGSTAYSLSAGGSIVSPLVPAILMTPICPRSLSFRPLILPHSSHIRIKIGSKLNQKPVNSVVKLSVDGIPQQDLDVGDEIYVINEVGTIYIDGT--KRSGIYCVAKTENDWIRGINELLGFNSSFRLT- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AFO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -201439 for 2326 contacts (-86.6/contact) +
2D Compatibility (PS) -32445 + (NN) -16508 + (LL) 476
1D Compatibility (HY) -19600 + (ID) 4000
Total energy: -273516.0 ( -117.59 by residue)
QMean score : 0.540
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