Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQRRQQSGFTLIEIMVVVVILGILAALVVPQVMSRPDQAKVTVAKGDIKAIAAALDMYKLDNFAYPSTQQGLEALVKKPTGNPQPKNWNKDGYLKKLPVDPWGNPYQYLAPGTKGPFDLYSLGADGKEGGSDNDADIGNWDN
3G20 Chain:A ((5-117))
-------------------------SLVVPNLMGNKDKADRQKVMSDLVALESTLDMYRLDNNRYPTTEQGLRALVSKPTVQPEPRNYRQDGYIRRLPQDPWGGDYQLLNPGQYSDIDIFSPGPDGVPNT---EDDIGNWT-
General information:
TITO was launched using:
RESULT:
Template:
3G20.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2684 for 763 contacts (-3.5/contact) +
2D Compatibility (PS) -12515 + (NN) -11106 + (LL) 2884
1D Compatibility (HY) -9200 + (ID) 2750
Total energy: -35371.0 ( -46.36 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_3G20.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G20-query.scw
PDB file :
Tito_Scwrl_3G20.pdb
: