Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGLLDLLEIRKAYGDTRVLEGVALSLAPGEVVSLLGPSGCGKSTLLRIAAGLDDDFQGTV---ERNPILGFGPDGENGRSGGIGVVFQEPRLLPWLTVAQNVGFA-DGWLEDE-----HWVERLLADVGLAGCGGLLPKQLSGGMAQRAAIARGLYGRPQVLLLDEPFSAVDAFTRMRLQDLLQDVVQNYEISVLLVTHDLDEAFYLADRVLLMGGRPGHIRREFHVPLARPRDRRAVELAYLRGEALTEMQRAHVL
1VCI Chain:A ((13-223))
----VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRD-VTYLPPKDRN-----ISMVFQ------HMTVYENIAFPLKKFPKDEIDKRVRWAAELLQ---IEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMN------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VCI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148758 for 1420 contacts (-104.8/contact) +
2D Compatibility (PS) -21236 + (NN) -16978 + (LL) 3240
1D Compatibility (HY) -16400 + (ID) 3500
Total energy: -203632.0 ( -143.40 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_1VCI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VCI-query.scw
PDB file :
Tito_Scwrl_1VCI.pdb
: