Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEDNFDDEFDGSLPSGPRHPMARRFRGYLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLR-MAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVNRWKEMGGWMDDDD
3V9W Chain:A ((29-230))
--------------------GLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPND-PDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPLS--
General information:
TITO was launched using:
RESULT:
Template:
3V9W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106561 for 1613 contacts (-66.1/contact) +
2D Compatibility (PS) -22088 + (NN) -10449 + (LL) -384
1D Compatibility (HY) -20800 + (ID) 6100
Total energy: -166382.0 ( -103.15 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_3V9W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V9W-query.scw
PDB file :
Tito_Scwrl_3V9W.pdb
: