Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGLIAEDLGVAVDQVNVKATTTERLGFTGREEGIAVHAVALLMAR
3Q8H Chain:B ((24-178))
FRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHF----PRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVV--
General information:
TITO was launched using:
RESULT:
Template:
3Q8H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127592 for 1294 contacts (-98.6/contact) +
2D Compatibility (PS) -16646 + (NN) -10375 + (LL) 4
1D Compatibility (HY) -15600 + (ID) 4650
Total energy: -174859.0 ( -135.13 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_3Q8H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q8H-query.scw
PDB file :
Tito_Scwrl_3Q8H.pdb
: