Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLLPLAVLAALSSVHVASAQAADVSAAVGATGQSGMTYRLGLSWDWDKSWWQTSTGRLTGYWDAGYTYWEGGDEGAGKHSLSFAPVFVYEFAGDSIKPFIEAGIGVAAFSGTRVGDQNLGSSLNFEDRIGAGLKFANGQSVGVRAIHYSNAGLKQPNDGIESYSLFYKIPI
2ERV Chain:A ((2-150))
------------------------DVSAAVGATGQSGMTYRLGLSWDWDKSWWQTSTGRLTGYWDAGYTYWEGGDEGAGKHSLSFAPVFVYEFAGDSIKPFIEAGIGVAAFSGTRVGDQNLGSSLNFEDRIGAGLKFANGQSVGVRAIHYSNAGLKQPNDGIESYSLFYKIPI
General information:
TITO was launched using:
RESULT:
Template:
2ERV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 17090 for 1204 contacts (14.2/contact) +
2D Compatibility (PS) -16169 + (NN) -9910 + (LL) 2740
1D Compatibility (HY) -19200 + (ID) 7450
Total energy: -32899.0 ( -27.32 by residue)
QMean score : 0.360
(partial model without unconserved sides chains):
PDB file :
Tito_2ERV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ERV-query.scw
PDB file :
Tito_Scwrl_2ERV.pdb
: