Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------------------MDTSTSVTYDSSLQISQ-----------------FILMGLPGIHEWQHWLSLPLTLLYLL-------ALGANLLIIITIQHETVLHEPMYHLLGI----------LAVVDIGLATTIMPKIL------AIFWFDAKAISLPMCFA---QIYAIHCFFCIESGIFLCM------AVDRYIAICRPLQYPSIVT-------KAFVFKATGFIMLRNGLLTIP-----VPILAAQRHYCSRNEIEHCLCSNLGVISLAC-DDITVNKFYQLMLA---------------WVLVGSD------MALVFSSYAVILHSVLRLNSAEAMSKALSTCSSHLILILFHTGIIVLSVTHLAEK-KIPLIPVFLNVLHNVIPPALNPLACALRMH---KLRLGFQRLLGLGQDVSK-- |
| 4C1N Chain:A ((1-442)) | GLTGLEIYKHLPKKNCKECGQPTCLAFAMQIAAGKAGLDACPYVSDEAKELLESASAPPVALIKVGKGEKVLEIGHETVLFRHDKRFEHPCGLAILVEDTLSEGEIKERVEKINKLVFDRVGQMHSVNLVALKGSSQDAATFAKAVATAREVTDLPFILIGTPEQLAAALETEGANNPLLYAATADNYEQMVELAKKYNVPLTVSAKGLDALAELVQKITALGYKNLILDPQPENISEGLFYQTQIRRLAIKKLFRPFGYPTIAFALDENPYQAVMEASVYIAKYAGIIVLNTVEPADILPLITLRLNIYTDPQKPIAVEPKVYEILNPGPDAPVFITTNFSLTYFCVAGDVEGARIPAYILPVDTDGTS-VLTAWAAG--KFTPEKIAQFLKESGIAEKVNHRKAILPGGVAVLSGKLQELSGWEILVGPRESSGINSFIKQRW |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C1N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -339104 for 2257 contacts (-150.2/contact) +
2D Compatibility (PS) -33371 + (NN) -8111 + (LL) 584
1D Compatibility (HY) -8400 + (ID) 2350
Total energy: -390752.0 ( -173.13 by residue)
QMean score : 0.121
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