Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGNLNWAILGPGSIAHEFAEGMRG-M-NREIYAVGARSLEKGQAFASQYGIENVYDDFDKMLADPAIDVVYIATPHSNHYEFIMKSLHNGKHVLAEKAITVSSKELNEINVLAKEK-GLIVKEAMTIFHMPLYKKLREIVESGAIGKLKIIQVAFGSAKEKDPKN-RFYNMDLAGGALLDIGTYALSFARYFLSETPDEVLTTMKKF------ETGVDEQSGILLKNNEEELAVVSLSFRAK--MPKRGVIACEEGFITVDEYPRASRATVTHTATGKVEEIE--VGETSKALEYEITAMEESVATG-EN-MTYQLTNDVIAIMSDVRTQWGIKFPFEK |
| 3CEA Chain:A ((6-343)) | RKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQSGFMRRYDDSYRYAKKIVDNGDIGKIIYMRGYGIDPISGMESFTKFATEADSGGIFVDMNIHDIDLIRWFTGQDPVQAYGLTSNIAAPQLADIGEFETGVAQLKMSDGVIATLIGGRHAAHGNQVELEVMGSNGWVRIGEHPDLNRVTVFNDQGVVRPSLQSFGERFDTAFTDEVQDFVNNVIVGKQPEVTVDDGIKALKIAKACQQSANIGKLVD- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CEA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -173106 for 2686 contacts (-64.4/contact) +
2D Compatibility (PS) -34399 + (NN) -6544 + (LL) 64
1D Compatibility (HY) -9600 + (ID) 2950
Total energy: -226535.0 ( -84.34 by residue)
QMean score : 0.512
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