Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIQEIKDLMTQFDESSLREFSFKTSDGELSFSKNEGKAPLVPTMSPMSHQPEATPTIATPVSNEAGEQTKQATEVVSEIPESTVTVAEGDVVESPLVGVAYLASGPDKPNFVSVGDSVKKGQTLMIIEAMKVMNEVPAPHDGVVTEILVANEEVIEFGKGLVRIK
3N6R Chain:A ((609-681))
--------------------------------------------------------------------------------------PDTSKMLLCPMPGLIVKV-------DVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE
General information:
TITO was launched using:
RESULT:
Template:
3N6R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49962 for 488 contacts (-102.4/contact) +
2D Compatibility (PS) -7431 + (NN) 4377 + (LL) 4448
1D Compatibility (HY) -5200 + (ID) 1000
Total energy: -54768.0 ( -112.23 by residue)
QMean score : 0.386
(partial model without unconserved sides chains):
PDB file :
Tito_3N6R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N6R-query.scw
PDB file :
Tito_Scwrl_3N6R.pdb
: