Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMKKWF-GLLFLGLALITLAACGQKTPEDIIKTELKDSYVGYSENPGSDYPFNDGDDVLTFNKKENSITNSQGQMTYFSVIPKEEVPAGTQRVIDELETKLKGT-NNFTIIINSTVKNPTKKDSEGAYQIALSDSGKAIRIFELGREPRSFGYYDFSGKAK
2EBG Chain:A ((1-106))
MQAVRLFQGYLWHPRAL-------ALDLKALLPGEVAGARLLWDEVPPPTPFFEDGTPTHT-------QRFYQLTLLVLTEEPPEALKPLAEEAAEALGEVLEGLPPEVGWLLLEDLRPL------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2EBG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18178 for 653 contacts (-27.8/contact) +
2D Compatibility (PS) -11149 + (NN) -5927 + (LL) 2728
1D Compatibility (HY) -4800 + (ID) 950
Total energy: -38276.0 ( -58.62 by residue)
QMean score : 0.395
(partial model without unconserved sides chains):
PDB file :
Tito_2EBG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EBG-query.scw
PDB file :
Tito_Scwrl_2EBG.pdb
: