Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIWDAYDQYGFITGLTLNRDQNI-----PQGLFHLVVDVILFHEDGDVLMMKRHPKKKAFPAYFEATAGGSALKGEN---------AKQAILRELKEETGIVPQ-----CLTFLNREWFSE-------RSYFVDHFIAKYNGAKDIITLQEGETVDYIWLKPEYIDLFLSKN-----KLIPSQIKLLKSLI
2DHO Chain:A ((26-212))
AEMCILIDENDNKIGAE-TKKNCHLNENIEKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRM--N-VTLNPDPNEIKSYCYVSKEELKELLKKAASGEIKITPWFKIIAATFL
General information:
TITO was launched using:
RESULT:
Template:
2DHO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66055 for 1149 contacts (-57.5/contact) +
2D Compatibility (PS) -16341 + (NN) -4958 + (LL) -12
1D Compatibility (HY) -5600 + (ID) 1650
Total energy: -94616.0 ( -82.35 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_2DHO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DHO-query.scw
PDB file :
Tito_Scwrl_2DHO.pdb
: