Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTM-LAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPDEQTIREAISGQ--ICRCTGYTTIVRSIQWAAAHQTVKAQS
1DGJ Chain:A ((6-154))
----LIVNGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVILDGKVVRACIIKMSRVAENASVTTLEGIGAPD-CLHPLQHAWIQHGAAQCGFCTPGFIVSAKALLDENVAPSREDVRDWFQKHHNICRCTGYKPLVDAVMDAAA--------
General information:
TITO was launched using:
RESULT:
Template:
1DGJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128644 for 1143 contacts (-112.5/contact) +
2D Compatibility (PS) -15412 + (NN) -2882 + (LL) 976
1D Compatibility (HY) -14800 + (ID) 3050
Total energy: -163812.0 ( -143.32 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_1DGJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DGJ-query.scw
PDB file :
Tito_Scwrl_1DGJ.pdb
: