Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTAGSDRRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALAHAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQ-DRYRTLNELYMAAAHRPELQRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLS-TDELTDAIARLVADGPEQREVGQSAHAGRTPD
2DG8 Chain:A ((7-181))
-----------DPQRRERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMTYHFTGIEQLLREAFGRFTDHIVAVFDEHLGAAADRDEAREAVADLVHELSEDSQRDLVLTQELYTLAARQPAYRELTHEWMRRSRVHLEKHFDPGTARQLDALIEGLTLHRALAREPHGRALTLEAIARITTTD------------------
General information:
TITO was launched using:
RESULT:
Template:
2DG8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68470 for 1252 contacts (-54.7/contact) +
2D Compatibility (PS) -19606 + (NN) -14696 + (LL) 536
1D Compatibility (HY) -6000 + (ID) 2150
Total energy: -110386.0 ( -88.17 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_2DG8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DG8-query.scw
PDB file :
Tito_Scwrl_2DG8.pdb
: