Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKPILIVDDSASIRQMLSFTLKSAGYE-VDEAADGKEGLGKAQSKSYSLVFTDQNMPNMDGLSLIRSLRNLAGYRSVPILMLTTESSDAMKQQGRSAGATGWLVKPFDPPKLLEVTRKVLP
1YMV Chain:A ((8-124))
----FLVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE
General information:
TITO was launched using:
RESULT:
Template:
1YMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57660 for 884 contacts (-65.2/contact) +
2D Compatibility (PS) -12615 + (NN) -8637 + (LL) -40
1D Compatibility (HY) -10800 + (ID) 2250
Total energy: -92002.0 ( -104.07 by residue)
QMean score : 0.652
(partial model without unconserved sides chains):
PDB file :
Tito_1YMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YMV-query.scw
PDB file :
Tito_Scwrl_1YMV.pdb
: