Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKSELIERIVTHQ----GQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRV-GRNPKTGESVRLDGKFVPHFKPGKELRDRVNEPE
2NP2 Chain:A ((9-106))
VTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKRKGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWGI-
General information:
TITO was launched using:
RESULT:
Template:
2NP2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11200 for 466 contacts (-24.0/contact) +
2D Compatibility (PS) -10429 + (NN) -5138 + (LL) 104
1D Compatibility (HY) -8400 + (ID) 1650
Total energy: -36713.0 ( -78.78 by residue)
QMean score : 0.642
(partial model without unconserved sides chains):
PDB file :
Tito_2NP2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NP2-query.scw
PDB file :
Tito_Scwrl_2NP2.pdb
: