Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNFSGNWKIIRSENFEEMLKALGVNMMMRKIAVAAASKPAVEIKQENDTFYIKTSTTVRTTEINFKIGEEFEEQTVDGRPCKSLVKWESGNKMVCEQRLLKGEGPKTSWSRELTNDGELILTMTADDVVCTRVYVRE
3PPT Chain:A ((1-130))
AADLAGKWILESSENFDDYMKAVGVGMVMRKMAN--AATPTQEIKIDGDSWSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTTCKID-GNAMIQDQ---KG-SPDSILSREVK-DGKMHMILKVNDVVCTRIYKRV
General information:
TITO was launched using:
RESULT:
Template:
3PPT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30669 for 950 contacts (-32.3/contact) +
2D Compatibility (PS) -14613 + (NN) -5758 + (LL) 736
1D Compatibility (HY) -10000 + (ID) 3100
Total energy: -63404.0 ( -66.74 by residue)
QMean score : 0.457
(partial model without unconserved sides chains):
PDB file :
Tito_3PPT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PPT-query.scw
PDB file :
Tito_Scwrl_3PPT.pdb
: