Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLVLAVLLTVGAAQEGISSRALWQFRSMIKCAIPGSHPLMDFNNYGCYCGLGGSGTPVDELDRCCETHDNCYRDAKNLDSCKFLVDNPYTESYSYSCSNTEITCNSKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYC
1VKQ Chain:A ((1-121))
----------------------ALWQFNGMIKCKIPSSEPLLDFNNYGCYCGLGGSGTPVDDLDRCCQTHDNCYMQAMKLDSCKVLVDNPYTNNYSYSCSNNEITCSSENNACEAFICNCDRNAAICFSKVPYNKEHKNLDMK---
General information:
TITO was launched using:
RESULT:
Template:
1VKQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67395 for 894 contacts (-75.4/contact) +
2D Compatibility (PS) -12830 + (NN) -7064 + (LL) 2508
1D Compatibility (HY) -16800 + (ID) 5050
Total energy: -106631.0 ( -119.27 by residue)
QMean score : 0.320
(partial model without unconserved sides chains):
PDB file :
Tito_1VKQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VKQ-query.scw
PDB file :
Tito_Scwrl_1VKQ.pdb
: