Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYENKIIDDNIIHASSIESSLNLVSDVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLKF-PLESWTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK
3S9U Chain:A ((5-164))
----RVSFMVAM-DENRVIGKDNNLPWRLPSELQYVKKTTM-------GHPLIMGRKNYEAIG---RPLPGRRNIIVTRNEGYH--VEGCEVAHSVEEVFELCKNEEEIFIFGGAQIYDLFL--PYVDKLYITKIH----HAFEGDTFFPEMDMTNWKEVFVE----------KGLTDEKNPYTYYYHVYEKQ
General information:
TITO was launched using:
RESULT:
Template:
3S9U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104222 for 1158 contacts (-90.0/contact) +
2D Compatibility (PS) -16794 + (NN) -44 + (LL) 1464
1D Compatibility (HY) -15200 + (ID) 2700
Total energy: -137496.0 ( -118.74 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_3S9U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S9U-query.scw
PDB file :
Tito_Scwrl_3S9U.pdb
: