Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVRPLNCIVAVSQNMGIGKNGDLPWPPLRNEFKYFQRMTTTSS---VEGKQNLVIMGRKTWFSIPEKNRPLKDRINIVLSRELKEPPRGAHFLAKSLDDALRLIE----QPELASKVDMVWIVGGSSVYQEAMNQPGHLRLFVTRIMQEFESDTFFPEIDL-----GKYKLLPEY-------PGVLSEVQEEKGIKYKFEVYEKKD
3NZB Chain:X ((4-205))
-QKSLTLIVALTTSYGIGRSNSLPWK-LKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDHALELLYRTYGSE-SSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRD-
General information:
TITO was launched using:
RESULT:
Template:
3NZB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94221 for 1316 contacts (-71.6/contact) +
2D Compatibility (PS) -19461 + (NN) -2468 + (LL) 96
1D Compatibility (HY) -13600 + (ID) 3200
Total energy: -132854.0 ( -100.95 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_3NZB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NZB-query.scw
PDB file :
Tito_Scwrl_3NZB.pdb
: