Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
1YAT Chain:A ((7-113))
-NVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKVN
General information:
TITO was launched using:
RESULT:
Template:
1YAT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53069 for 792 contacts (-67.0/contact) +
2D Compatibility (PS) -11964 + (NN) -5014 + (LL) 208
1D Compatibility (HY) -11200 + (ID) 3050
Total energy: -84089.0 ( -106.17 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_1YAT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YAT-query.scw
PDB file :
Tito_Scwrl_1YAT.pdb
: