Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
IQLIPPLINLLMSIEPDVIYAGHDNTKP-------------DTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQ---MLYFAPDLILNEQRMK-ESSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTI--PLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALSVEFPEMMSEVIAAQLPKILAGMVKPLLFHKK
1A28 Chain:A ((5-255))
-QLIPPLINLLMSIEPD-----------VIYAGHDNTKPDT--SSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSG-QMLYFA--PDLILNEQRMKE-SSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPL--EGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALSVEFPEMMSEVIAAQLPKILAGMVKPLLFHK-
General information:
TITO was launched using:
RESULT:
Template:
1A28.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -174207 for 1757 contacts (-99.2/contact) +
2D Compatibility (PS) -24463 + (NN) -8989 + (LL) 1104
1D Compatibility (HY) -41200 + (ID) 11450
Total energy: -259205.0 ( -147.53 by residue)
QMean score : 0.844
(partial model without unconserved sides chains):
PDB file :
Tito_1A28.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1A28-query.scw
PDB file :
Tito_Scwrl_1A28.pdb
: