Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MMSFAPNASHSPVFLLLGFSRANISYTLLFFLFLAIYLTTILGNVTLVLLIS-----------WDSRLHSPMYYLLRGLSVIDMGLSTVTLPQLLAHLVSHYPTIPAAR----CLAQFFFFYAFGVTDTLVIAVMALDRYVAICD-----------------PLHYALVMNHQRCACLLALSWVVSILHTMLRVGLVLP--------------LCWTGDAGGNVNLPHFFCDHRPLLRASCSDIH---SNELAIFFEGGFLM-LGPCALIVLSYVRIGAAILRLPSAAGRRRAVSTCGSHLTMVGFL------------------YGTIICVYFQPPFQNSQYQDMVASVMYTAI--TPLANPFVYSLHNKD-----VKGALCRLLEWVKVDP------- |
| 4WGV Chain:A ((5-399)) | -----VGYMDPGNWITSMQGGAQYGYTLLFVILISSLAAMLLQSMTVRLGIATGKDLAQMTRHFLSKPVAIIFWIIAELAIIATDIAEVIGSAIALDLIFGIPLIVGALITVFDVFLLLFIMRFGFRKIEAIVGTLIFTVLAIFVFEVFISSPQLTDILNGFVPHKEIVTNQGILYIALGIIGATIMPHNLYLHSSIVQSRKYDRHDNEEKAQAIKYATIDSNLQLSIAFVVNCLLLTLGAALFFGTKTNDLGGFYDLYHALKTEPVLGATLGGVMSTLFAVALLASGQNSTITGTLAGQIVMEGFLRLSIPNWLRRLITRSLAVIPVIICLIIFKGNSEKIEQLLVFSQVFLSIALPFSLIPLQLATSNKKLMGPFINKTWVNIISWTLIVILSGLNVY |
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General information:
TITO was launched using:
| RESULT:
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Template: 4WGV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -272906 for 2550 contacts (-107.0/contact) +
2D Compatibility (PS) -31852 + (NN) -6719 + (LL) 664
1D Compatibility (HY) -20800 + (ID) 2850
Total energy: -334463.0 ( -131.16 by residue)
QMean score : 0.167
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