Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYRIVSSNILKYKNCEPKIDESAFIAGDSHIVGKVEIGREASIWFNCVIRGDIGSIKIGDGTNIQDGTVIHVDR-----NPGGDTIIGDMVTVGHFCMLHACTVHDKALIGMGSIVMDHAIVESEAMVAAGSLVTHRKVIKSGEMWAGRPAKFFKKISDEEVKYITQSAQNYIMLMKKYKN
3R1W Chain:A ((11-183))
-------SVRTYQGISPKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGKVLESGFVYMGTPAKKVRPITEKERSFFTYGAGNYVRLKDKHLA
General information:
TITO was launched using:
RESULT:
Template:
3R1W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139643 for 1424 contacts (-98.1/contact) +
2D Compatibility (PS) -18608 + (NN) -5953 + (LL) 740
1D Compatibility (HY) -15600 + (ID) 3700
Total energy: -182764.0 ( -128.35 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_3R1W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R1W-query.scw
PDB file :
Tito_Scwrl_3R1W.pdb
: