Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDYAPHTAENVVQNANKLIDVFRKN---NGFIAFVRVNFYDGKDVLQPNAMISLP--PKEGDDYSRFHHLLDKRDDDFVIDKRHFSAFVGTDLDLQLRRRGIDTIVLGGVATHIGVDTTARDAYQLNYNQFFVTDMMSAQNETLHQFPIDNVFPLMGQTITTNDFLNILN
3HB7 Chain:A ((29-186))
-----PGGETIIPDLQKIFEWVRGREGDDIHLVHIQ-EAHRKNDADF----RVRPLHAVKGTWGSDFIPELYPQEDEYIVQKRRHSGFAHTDLDLYLKEEGIDTVVLTGVWTNVCVRSTATDALANAYKVITLSDGTASKTEEMHEYGLNDLS-IFTKVMTVDQYIQAW-
General information:
TITO was launched using:
RESULT:
Template:
3HB7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59938 for 1090 contacts (-55.0/contact) +
2D Compatibility (PS) -16167 + (NN) -2707 + (LL) 332
1D Compatibility (HY) -8000 + (ID) 1950
Total energy: -88430.0 ( -81.13 by residue)
QMean score : 0.357
(partial model without unconserved sides chains):
PDB file :
Tito_3HB7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HB7-query.scw
PDB file :
Tito_Scwrl_3HB7.pdb
: