Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTKIMGILNVTPDSFSDGGKFNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVGFDVKISVDTFRSEVAEACLKLGVDMINDQWAGLYDHRMFQIVAKYDAEIILMHNGNGNRDEP--------VVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMM-GYDTT--PVE-RDEVTAATTAYGIMKGVRAVRVHNVELNAKLAKGIDFLKENENARHNLS
1EYE Chain:A ((5-258))
--PVQVMGVLNVTDDSFSDGGCYLDLDDAVKHGLAMAAAGAGIVDVGG--------------ETSRVIPVVKELAAQGITVSIDTMRADVARAALQNGAQMVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGFAKTAQHNWAILHALPELVATGIPVLVGASRKRFLGALLAGPDGVMRPTDGRDTATAVISALAALHGAWGVRVHDVR-----------------------
General information:
TITO was launched using:
RESULT:
Template:
1EYE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133550 for 1951 contacts (-68.5/contact) +
2D Compatibility (PS) -25137 + (NN) -19053 + (LL) 2668
1D Compatibility (HY) -16400 + (ID) 4850
Total energy: -196322.0 ( -100.63 by residue)
QMean score : 0.675
(partial model without unconserved sides chains):
PDB file :
Tito_1EYE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EYE-query.scw
PDB file :
Tito_Scwrl_1EYE.pdb
: