Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MIRQARPEDRFDIAKLVYMVWDDMELELVKHLPKDMVLDAIEKSCVDATYRTFYQHILVYEVENKVAGCIISYSGENELKYEKAWELLDLPEEIKQYGTPLPVKEAKDDEYYIETIATFAAYRGRGIATKLLTSLLESNTH---VKWSLNCDINNEAALKLYKKVGFISDGQIELYKHMYHHLIVK-
1U6M Chain:A ((2-189))
SLIRSATKEDGQAIARLVLVILKDMELPILEEVSEEQMIDLLAEATAYPTYRYGYQRILVYEHAGEVAGIAVGYPAEDEKIIDEPLREVFKKHGLAEDVRLFIEEETLPNEWYLDTISVDERFRGMGIGSKLLDALPEVAKASGKQALGLNVDFDNPGARKLYASKGFKDVTTMTISGHLYNHMQKEV
General information:
TITO was launched using:
RESULT:
Template:
1U6M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106991 for 1389 contacts (-77.0/contact) +
2D Compatibility (PS) -19608 + (NN) -10048 + (LL) 0
1D Compatibility (HY) -12800 + (ID) 2850
Total energy: -152297.0 ( -109.65 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_1U6M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U6M-query.scw
PDB file :
Tito_Scwrl_1U6M.pdb
: