Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEHTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNSKKEGTFSLEERMDLIEQSVKHLPNVKV-HQFSGLLVDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVPPYVEKALKKKFK
3ND7 Chain:A ((4-158))
----IALFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFI------LFTPEEKKYLIEEATKEMPNVRVIMQETQLTVESAKSLGANFLIRGIRNVKDYEYEKDIAKMNQHLAPEIETVFLLAEEPYAHVSSSLLKEVLRFGGDVSDYLPPNIYHALKQK--
General information:
TITO was launched using:
RESULT:
Template:
3ND7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95805 for 1094 contacts (-87.6/contact) +
2D Compatibility (PS) -15605 + (NN) -2595 + (LL) 556
1D Compatibility (HY) -14000 + (ID) 3350
Total energy: -130799.0 ( -119.56 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_3ND7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ND7-query.scw
PDB file :
Tito_Scwrl_3ND7.pdb
: