Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYQPHYFQEVRKAQQESYSPYSQFKVGAYLKTKDGRTFYGTNVENASYPLSICAERASLVSAISQGYRPGDFESITVTVDADKPSSPCGACRQVLKELCDDDMPVYMTNHKGDMVMMTVAELLPFGFSGKDLE
2D30 Chain:A ((11-133))
--NSKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSEGDK--EFVAIAIVADTKRPVPPCGACRQVMVELCKQDTKVYLSNLHGDVQETTVGELLPGA-------
General information:
TITO was launched using:
RESULT:
Template:
2D30.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47781 for 979 contacts (-48.8/contact) +
2D Compatibility (PS) -13846 + (NN) -9582 + (LL) 68
1D Compatibility (HY) -7600 + (ID) 2950
Total energy: -81691.0 ( -83.44 by residue)
QMean score : 0.500
(partial model without unconserved sides chains):
PDB file :
Tito_2D30.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D30-query.scw
PDB file :
Tito_Scwrl_2D30.pdb
: