Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKINDINDLVNATFQVKKFFRDTKKKFNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKLISELEEYIKN
3G3Z Chain:A ((4-106))
------LDQLGTRINLICNVFDKWIGQQDLNYNLFAVLYTLATE--GSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLTESAQE----
General information:
TITO was launched using:
RESULT:
Template:
3G3Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27741 for 680 contacts (-40.8/contact) +
2D Compatibility (PS) -10944 + (NN) -4619 + (LL) 648
1D Compatibility (HY) -2400 + (ID) 950
Total energy: -46006.0 ( -67.66 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_3G3Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G3Z-query.scw
PDB file :
Tito_Scwrl_3G3Z.pdb
: