Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQIIEGKLQLQGNEKIAILTSRFNHIITDRLKEGAMDCFKRHGG-DEELLDLVLVPGAYELPLILDKLLESGKYDGVCVLGAIIRGGTPHFDYVSAEATKGIASAMLKYSMPVSFGVLTTDNIEQAIERAGSKAGNKGFEAMSTLIELLSLCQTLKD
3NQ4 Chain:Z ((1-154))
MNIIKANVAAP-DARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTAHFEYVAGGASNGLASVAQDSGVPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAI--
General information:
TITO was launched using:
RESULT:
Template:
3NQ4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108088 for 1293 contacts (-83.6/contact) +
2D Compatibility (PS) -16968 + (NN) -10162 + (LL) -184
1D Compatibility (HY) -12000 + (ID) 3750
Total energy: -151152.0 ( -116.90 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_3NQ4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NQ4-query.scw
PDB file :
Tito_Scwrl_3NQ4.pdb
: