Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLKDERSTYLDNNIRFRAIGDLEGFSKELRDTILRLENDTRYFKDFTQVLALNYGSKNELSRAFKSLL-ENPPNHINNIESLENEISHRLDTHDLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGELKC
2VG2 Chain:D ((53-282))
-DRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGRLNPERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRTRRFGSA--
General information:
TITO was launched using:
RESULT:
Template:
2VG2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104058 for 1820 contacts (-57.2/contact) +
2D Compatibility (PS) -23870 + (NN) -6764 + (LL) 488
1D Compatibility (HY) -13600 + (ID) 4300
Total energy: -152104.0 ( -83.57 by residue)
QMean score : 0.416
(partial model without unconserved sides chains):
PDB file :
Tito_2VG2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VG2-query.scw
PDB file :
Tito_Scwrl_2VG2.pdb
: