Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAISIKSPKEIKALRKAGELTAQALALLEREVRPGVSLLELDKMAEDFIKSSHARPAFKGLYGFPNSVCMSLNEVVIHGIPT-DYVLQEGDIIGLDLGVEVDGYYGDSALTLPIGAISPQDEKLLACSKESLMHAISSIRVGMHFKELSQILEGAIT------ERGFVPLKGFCGHGIGKKPHEEPEIPNYLEKGVKANSGPKIKEGMVFCLEPMVCQKQGEPKILADKWSVVSVDGLNTSHHEHTIAIVGNKAVILTER
3TAV Chain:B ((35-285))
-----RTPGELDAMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFLGYHGFPASICSSVNDQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIPSDEALSEATRLSMEAGIAAMIPGNRLTDVSHAIELGTRAAEKQFDRAFGIVDGYGGHGIGRSMHLDPFLPNEGAPG----KGPLLAVGSVLAIEPMLTLGTTQTRVLADDWTVVTTDGSRAAHWEHTVAVTEAGPRILTMR
General information:
TITO was launched using:
RESULT:
Template:
3TAV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130556 for 2185 contacts (-59.8/contact) +
2D Compatibility (PS) -26409 + (NN) -8536 + (LL) 1052
1D Compatibility (HY) -12800 + (ID) 4650
Total energy: -181899.0 ( -83.25 by residue)
QMean score : 0.572
(partial model without unconserved sides chains):
PDB file :
Tito_3TAV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TAV-query.scw
PDB file :
Tito_Scwrl_3TAV.pdb
: