Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MESVETNKNLPIEYRSEQGRLNILGFWIFLGAEIALFATLFATYFVMRKAGSNAGHPP-AEMFELWLVLIMTFLLLTSSFTCGLAIGEMRKGNVKMLTIYSIITLILGAGFVGFELYEFAHYVTEGVTMQVGSYWSAFFVLLGTHGLHVTVGIFWISFILIQIKMHGLTPKTASKVFISSLYWHFLDVVWIFIFTGVYLLGMVN
1FFT Chain:C ((19-203))
---------------HDAGGTKIFGFWIYLMSDCILFSILFATYAVLVNGT-A-GGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGA--
General information:
TITO was launched using:
RESULT:
Template:
1FFT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154829 for 1259 contacts (-123.0/contact) +
2D Compatibility (PS) -18588 + (NN) -1859 + (LL) 1300
1D Compatibility (HY) -26800 + (ID) 4200
Total energy: -204976.0 ( -162.81 by residue)
QMean score : 0.270
(partial model without unconserved sides chains):
PDB file :
Tito_1FFT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FFT-query.scw
PDB file :
Tito_Scwrl_1FFT.pdb
: