Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKAFLSIGTNIGERLENLNDALRGLAASNQINITNVSSVYETDAVGYEDQAAFLNIAVEIETDFPPIDLLDFCLALELELGRVRLFKWGPRLIDIDVLLYDDVKTDTEKLKIPHPYMKERAFVMIPLIEISPEKSNLVENPALLEEQGVRKIKNQVNW
1RTZ Chain:A ((3-128))
---AYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGR-----GGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPE-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1RTZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100942 for 929 contacts (-108.7/contact) +
2D Compatibility (PS) -13535 + (NN) -5403 + (LL) 2872
1D Compatibility (HY) -10400 + (ID) 2650
Total energy: -130058.0 ( -140.00 by residue)
QMean score : 0.420
(partial model without unconserved sides chains):
PDB file :
Tito_1RTZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RTZ-query.scw
PDB file :
Tito_Scwrl_1RTZ.pdb
: