Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LITHVIWDMGETLNTVPNTRYDHYPLDTYPEVVLRKDAKETLEKVKQLGFKQAILSNT---ATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKMEKPDKTIFDFTLNELQIDKTEAVMVGNTFESDIIGANRAGIHAIWLQNPEVCLQDERQPLVAPPFVIPVWDLADVPEALLLLKKISS
2OM6 Chain:A ((97-233))
------------------------------ESLVLEGTKEALQFVKERGLKTAVIGNVMFWPGS---YTRLLLERFGLMEFIDKTFFADEV----LSYKPRKEMFEKVLNSFEVKPEESLHIGDTYAEDYQGARKVGMWAVWINQEGDKVRKL----EERGFEIP--SIANLKDVIELIS----
General information:
TITO was launched using:
RESULT:
Template:
2OM6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42056 for 985 contacts (-42.7/contact) +
2D Compatibility (PS) -14220 + (NN) -6955 + (LL) 2412
1D Compatibility (HY) -9200 + (ID) 1750
Total energy: -71769.0 ( -72.86 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_2OM6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OM6-query.scw
PDB file :
Tito_Scwrl_2OM6.pdb
: