Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPLVGINMKNYINTRAQTSEWLEATIPLLGNFSDVDTFIF-PSMGTLETTANLLAGTSFGF--GPQNMAPEKSGPLTGEFSVESIIDLSANYVEIGHAERKNLFHEKTSEIAKKIQLALDEKITPVVCVGEGIRANDTNELKNALKKQIEALFDTIQVTQFKNVVLAYEPEWAIGKANSADTDYIESAHQALREIIRELGGDET--LVRIIYGGSVSKENAAEIVRQKNVDGLFVGRFGHKPQNFADIVSIVSKTKG
3UWZ Chain:B ((9-257))
MRTPIIAGNWK--MNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAI---KSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLL--------
General information:
TITO was launched using:
RESULT:
Template:
3UWZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111248 for 1980 contacts (-56.2/contact) +
2D Compatibility (PS) -26767 + (NN) -13106 + (LL) 396
1D Compatibility (HY) -12000 + (ID) 4000
Total energy: -166725.0 ( -84.20 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_3UWZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UWZ-query.scw
PDB file :
Tito_Scwrl_3UWZ.pdb
: