Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MYEKARQMMIEAHSGQVRKITGEP--YFSHPLNVARILRRAGFREEVVVAGLLHDAVE-----------DTEMTDADIRATFGDEVADLVASHTENKTLSWEERKAHTIEQVRTGNLEEKALIVADKLDNLTSVKYALSSEGKSVWSYFKRGYDLQKWYNQGIKNNMEYGLNPSEIPPFFDEYARLVKWIFKK
4N6W Chain:A ((39-225))
MSLSNSSKVSVLISLLEKSRDLDYIGEAINQLEHSLQCAYFAQRSGADNEMVLAALLHDLGHYCNGGYGVWQHEKVGADYLRGLGFSERVACLIEGHVAAKRYLVSSKASYLKN------LSDASRKTLEYQGGPMDEGERRLFEERE---DFKDCLKIRAWDEKGKQTDLK--------VPGPEHYRKMMEEHLSE
General information:
TITO was launched using:
RESULT:
Template:
4N6W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22699 for 1267 contacts (-17.9/contact) +
2D Compatibility (PS) -17420 + (NN) -7715 + (LL) 688
1D Compatibility (HY) -800 + (ID) 1500
Total energy: -49446.0 ( -39.03 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_4N6W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N6W-query.scw
PDB file :
Tito_Scwrl_4N6W.pdb
: