Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------------------------MVVKQKADYAALKEELIAYAYEIGIQKIGFTTADPFL----FLKERLLEAEALD-LFTGFEHPVIEERVYPELIFKEPQSIIAIALAYPSKLKEAPVSKK-----GARRGVFARAS-WGIDYHTVLREKLALLETF--LIERLP----------DVRMKSMV--DTGELSDVAVAERAGIGWRGKNT--------LLITPEYGSWVYLGEMITNIPFEPDTPASDLCGSCNQCVKACPTGSLLGEGKMNPKIC----------LSYLTQTKDFLDEKYRE----VLHNRLYGCDTCQVVCPYNRGHDFHFHEEMEPDPELVRPELKPLLHI--SNRAFKEQFGDMAGSWRGKKPIQRNAIIILARYKDKTAVPDLIDCLQNDPR-PVIRGTAGWAL---RKIGGRDAEEAVERALQTEQDVQVLQELTAIPN- |
| 4NLE Chain:A ((18-485)) | TIPNVLANRYASDEMVAIWSPEAKIIAERRLWLAVLRAQAELGVAVPDGVVEDYERVLENVDLESIAARERVRHDVKARIEEFNAHEHVHKGMTSRDLTENVEQLQIRQSLELVFSHGVAVVARLAERAVVYRDLVMAGRSHNVAAQATTLGKRFASAAEETLVALTRLRELIDRYPLRGVKGPMGTAQDMLDLFGGDVGKLADLERRVAEFLGFTEVFTSVGQVYPRSLDHDVLSALVQFGAGPSSMAHTIRLMAGH--ELVTEGFAPGQVGSSAMPHKMNTRSCERVNGLQVVLRGYASMAAELAGAQWNEGDVFCSVVRRVALPDAFFAIDGQTETFLTVLDEFGAYPAVIQRELDRYLPFLATTRILMAAVRAGVGREAAHEVIKEHAVAVALAMREQGREPDLIDRLAGDPRLPLDKVALEAALEDKQAFTGAAGDQVDGVVAAVGELVSRYPEAAKYTSG |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NLE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -57015 for 2642 contacts (-21.6/contact) +
2D Compatibility (PS) -38654 + (NN) 2690 + (LL) 232
1D Compatibility (HY) -10000 + (ID) 3600
Total energy: -106347.0 ( -40.25 by residue)
QMean score : 0.170
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