Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ME------KSVNVIGAGLAGSEAVWQLVNRGVKVDLYEMRPVKQTPAHHTDKFAELVCTNSLRANGLTNAVGVIKEEMRMLDSIIIEAADKASVPAGGALAVDRHEFSGYITDKVKNHPLVTVHTEEVTTIPEGPTIIATGPLT-SPALADEIKQLTGEEYLYFYDAAAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPMSEEEFNAFYEALVTAETAALKEFEKEVFFEGCMPIEVMAKRGIKTMLFGPLKPVGLEDPKTGKRPYAVLQLRQDDAAGTLYNMVGFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLFFAGQMTGVEGYVESAASGLAAGINAANFIQEKELVVFPTETAIGSLAHYITSASKKSFQPMNVNFGLFPELETKIRAKQERNEKLAERALNAIKKVAEEL- |
1GCU Chain:A ((1-292)) | MDAEPKRKFGVVVVGVGRAGSVRLRDLKDPRSA-AFLNLIGFVSRRELGSLDEVRQISLEDALRSQEIDVAYICS-------------------------------------------ESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLMEEFEFLRREVLGKELLKGSLRFTASPLEEERF-------------------------GFPAFSGISRLTWLVSLFGELSLISATLEERKEDQYMKMTVQLETQNKG---------LLSWIEEK-----GPGLKRNRYVNFQFTSGSL--EEVPSVGVNKNIFLKDQDIFVQKLLDQVS-----------------------------------------------------------------AEDLAAEKKRIMHCLGLASDIQKLCH |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1GCU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -24060 for 2282 contacts (-10.5/contact) +
2D Compatibility (PS) -29822 + (NN) -2306 + (LL) 12424
1D Compatibility (HY) -8400 + (ID) 2050
Total energy: -54214.0 ( -23.76 by residue)
QMean score : 0.259
|
|
|