Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYEYFPGFYDRLMD--SELYDEWLEFSADFIGD---APKKVLDLACGTAEFALRLSFSGHQVTGVDLSKEMVAVAKEKVAAAEIDLPIIEQDMSKLALKQTFDVVTCFCDSLNYLETEQALEATIQAVSAHLEPNGLFLFDVHSVFKIEQGFKDYSYGDSDEEISTIWNSFPGEHPHSIEHELTFYILGEDDTYNRVDELHKERTYPIATYENLLKKFGFTKIDIYADFSHE-KPNKTSERIFFAARK
3PFG Chain:A ((15-245))
--SGEIAELYDLVHQGKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP----DAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFT------------
General information:
TITO was launched using:
RESULT:
Template:
3PFG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94824 for 1821 contacts (-52.1/contact) +
2D Compatibility (PS) -24388 + (NN) -10504 + (LL) 1988
1D Compatibility (HY) -5200 + (ID) 2250
Total energy: -135178.0 ( -74.23 by residue)
QMean score : 0.310
(partial model without unconserved sides chains):
PDB file :
Tito_3PFG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PFG-query.scw
PDB file :
Tito_Scwrl_3PFG.pdb
: