Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQIDKQKIADAVKVILEAVGENPDREGLIDTPMRVARMYEEVFAGLKKD-PSVHFDTIFEEQHEELVLVKDIRFSSMCEHHLVPFFGVAHVAYLPQNGRVAGLSKLARVVDDVSRRPQLQERITTTVAEIMMEKLKPLGVMVIMEAEHMCMTIRGVNKPGTKTITSAVRGAFKNDDKLRSEVLALIKHN
1WM9 Chain:B ((32-216))
--EVDLERLQALAAEWLQVIGEDPGREGLLKTPERVAKAWAFLTRGYRQRLEEVVGGAVFPAEGSEMVVVKGVEFYSMCEHHLLPFFGKVHIGYIP-DGKILGLSKFARIVDMFARRLQVQERLAVQIAEAIQEVLEPQGVGVVVEGVHLCMMMRGVEKQHSRTVTSAMLGVFRENQKTREEFLSHLR--
General information:
TITO was launched using:
RESULT:
Template:
1WM9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109305 for 1395 contacts (-78.4/contact) +
2D Compatibility (PS) -20095 + (NN) -7332 + (LL) 396
1D Compatibility (HY) -16800 + (ID) 3850
Total energy: -156986.0 ( -112.53 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_1WM9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WM9-query.scw
PDB file :
Tito_Scwrl_1WM9.pdb
: