Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKITPPQPFLFEKGKRAVLLLHGFTGSSADVRILGRFLQENNYTCYAPQYRGHGVSPDLLLKTGPNDWWEDVLEAYDHLKSLGYTEIAVAGLSLGGLFSLKLGFS-RPLKGIIAMSTPTRMDSS-SPIIQGFLDYVRNYKKLEGKTTEQIDAEMVAYKDAPMNTIAKLKDEISGVVAEIDMIYAPIMVVQGEKDDMVDVSGAQLIYDTVESTKKELHWFKESGHVITLDKERKEVNQAILTFLDSLDWQE
3RM3 Chain:A ((31-269))
-----AEPFYAENGPVGVLLVHGFTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHDWVASVEEGYGWLKQ-RCQTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIAAGMTG-LPRYLDSIGS--DLKNPDVKEL--AYEKTPTASLLQLARLMAQTKAKLDRIVCPALIFVSDEDHVVPPGNADIIFQGISSTEKEIVRLRNSYHVATLDYDQPMIIERSLEFFAKHA---
General information:
TITO was launched using:
RESULT:
Template:
3RM3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127640 for 2117 contacts (-60.3/contact) +
2D Compatibility (PS) -24346 + (NN) -5558 + (LL) 1452
1D Compatibility (HY) -16800 + (ID) 3200
Total energy: -176092.0 ( -83.18 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_3RM3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RM3-query.scw
PDB file :
Tito_Scwrl_3RM3.pdb
: