Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAIFITLEGPDGSGKTTVGTLLNQKMTEAGI-DFIKTREPGGSPISEKVRNIVLGI---GNEEMDPKTEVLLIAGARRQHVVETIRPALAAGKSVLCDRFMDSSLAYQGAGRDMNMEQVLQVNLYAIEDTLPDRTYYLDVPAEVGLARIAANKGREVNRLDKEDITYHEKVQAGYEKVINMFPERFMRVDATKTPEEITETILADILRQLA
5TMP Chain:A ((2-200))
-RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARG--ELDRIEQESFDFFNRTRARYLELAAQ-DKSIHTIDATQPLEAVMDAI---------
General information:
TITO was launched using:
RESULT:
Template:
5TMP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45379 for 1526 contacts (-29.7/contact) +
2D Compatibility (PS) -21028 + (NN) -5351 + (LL) 1432
1D Compatibility (HY) -11600 + (ID) 3600
Total energy: -85526.0 ( -56.05 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_5TMP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5TMP-query.scw
PDB file :
Tito_Scwrl_5TMP.pdb
: