Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVRGFELVSQFSNKELLPKRETAHAAGYDLKVAKKTVIEPGEITLVPTGIKAHMQPGEVLYLYDRSSNPRKKGIVLINSVGVIDGDYYNNQVNEGHIFAQMQNITDQAVILEEGERIVQAVFAPFL-----LADDDQATGMRTGGFGSTGK
3LQW Chain:A ((27-151))
--------LVKKLVEDAIVPTRGSKCAAGIDLYSNTNFIIQPHERFLVSTGVSVQIPHQCYGRIAPRSSLALKYGIDVGA--GVIDEDY------RGEIKVILFNHSNEIFNGRKGDRIAQLIIERISYCRISEVKELNTT------------
General information:
TITO was launched using:
RESULT:
Template:
3LQW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51905 for 810 contacts (-64.1/contact) +
2D Compatibility (PS) -12787 + (NN) 158 + (LL) 648
1D Compatibility (HY) -5200 + (ID) 1800
Total energy: -70886.0 ( -87.51 by residue)
QMean score : 0.393
(partial model without unconserved sides chains):
PDB file :
Tito_3LQW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LQW-query.scw
PDB file :
Tito_Scwrl_3LQW.pdb
: