Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNQEKMEKAIYQFLEALGENPDREGLKDTPKRVAKMYI-EMFSGLNQDPKEQFTAVFSENH-EEVVIVKDIPFYSMCEHHLVPFYGKAHIAYLPNDGRVTGLSKLARAFEVASKRPQLQERLTAQVAQALEDALAPKGIFVMIEAEHMCMTMRGIKKPGSKTITTVARGLYKDDRYERQEILSLIQKG
4DU6 Chain:D ((40-220))
-----RIQAHMTEVMHLLNLDLTDDSLADTPRRIAKMYVDEIFSGLDYENFPKITLIQNKMKVDEMVTVRDITLTSTCEHHFVTIDGKATVAYIPKDS-VIGLSKINRIVQFFAQRPQVQERLTQQILLALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRQEFLRAVR--
General information:
TITO was launched using:
RESULT:
Template:
4DU6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81018 for 1322 contacts (-61.3/contact) +
2D Compatibility (PS) -20245 + (NN) -10349 + (LL) 204
1D Compatibility (HY) -14400 + (ID) 3550
Total energy: -129358.0 ( -97.85 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_4DU6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DU6-query.scw
PDB file :
Tito_Scwrl_4DU6.pdb
: