Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKGLMISFEGPDGAGKTTVLEAVLPLLREKLSQDILTTREPGGVTISEEIRHIILDVKHT--QMDKKTELLLYMAARRQHLVEKVL-PALEEGKIVLMDRFIDSSVAYQGSGRGLDKSHIKWLNDYATDSHKPDLTLYFDVPSEVGLERIQKSVQREVNRLDLEQLDMHQRVRQGYLELADSEPNRIVTIDASQQLDEVIAETFSIILDRINQ
3LV8 Chain:A ((29-232))
-----FIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKE-EHPGEELQDITELLLVYAARVQ-LVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLER-------ELDRIEKMDISFFERARERYLELANSD-DSVVMIDAAQSIEQVTADIRRALQDWLSQ
General information:
TITO was launched using:
RESULT:
Template:
3LV8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72267 for 1553 contacts (-46.5/contact) +
2D Compatibility (PS) -21690 + (NN) -12420 + (LL) 1208
1D Compatibility (HY) -13200 + (ID) 4100
Total energy: -122469.0 ( -78.86 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_3LV8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LV8-query.scw
PDB file :
Tito_Scwrl_3LV8.pdb
: