Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMKHDIEKVLISEEEIQKKVKELGAELTSEYQDTFP---LAIGVLKGALPFMADLIKHIDTYLEMDFMDVSSYGNSTVSSGEVKIIKDLDTSVEGRDILIIEDIIDSGLTLSYLVELFRYRKAKSIKIVTLLDKPSGRKADIKADFVGFEVPDAFVVGYGLDYAERYRNLPYIGVLKPAVYES
4RHT Chain:B ((21-199))
----DIKSVLLTAEQIQARIAELGEQIGNDYRE---QDLLLITVLKGAVLFVTDLARAIPVPTQFEFMAVSSY--------VVRILKDLDRDIHGRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPDAVHANVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTLDPRV---
General information:
TITO was launched using:
RESULT:
Template:
4RHT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141120 for 1225 contacts (-115.2/contact) +
2D Compatibility (PS) -17355 + (NN) -5262 + (LL) 472
1D Compatibility (HY) -21600 + (ID) 4050
Total energy: -188915.0 ( -154.22 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_4RHT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RHT-query.scw
PDB file :
Tito_Scwrl_4RHT.pdb
: