Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVYKVIDIIGTSPTSWEQAAAEAVQRARDSVDDIRVARVIEQDMAVDSAGKITYRIKLEVSFKMRPAQPR
2DEV Chain:D ((4-66))
--VYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRL------
General information:
TITO was launched using:
RESULT:
Template:
2DEV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23640 for 404 contacts (-58.5/contact) +
2D Compatibility (PS) -7128 + (NN) -5267 + (LL) 364
1D Compatibility (HY) -5600 + (ID) 1050
Total energy: -42321.0 ( -104.75 by residue)
QMean score : 0.681
(partial model without unconserved sides chains):
PDB file :
Tito_2DEV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DEV-query.scw
PDB file :
Tito_Scwrl_2DEV.pdb
: