Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAGVSEAERRGHRKLVRFQARRAIGPIRPTSAAWDRDFDPAGKRIAVVGTDAAAAHYISRLSESAAS-------VTVFTQ---APRRVVTGVPLW--TTRAKRWLRRRTGAEHPAVAWATAAIDALTSSGIRTSDGVEH--PVDAIIYGTGFAIADQVGDQTLVGAGGVTI-----RQAWDDGMEPYLGVAVHGFPNYFFITGPDTAAQARCVVECMKLMERTASR----------------------------RIEVRRSSQQVFNERAQLKPAQP-------HRQTGGLEAFDLSSA-----------ATEDDQTYDGAATLTLAGARFRVRVRLTGHLDPIDGNYHWQGTVFDSLPET-----SLTHARAATLTIGGRSAPARITEQTPWGTHSVAGVGPPPYARSGPASATT------------- |
3J9O Chain:B ((79-505)) | -VIDKLIDLQVNSIISNDEFRALEQEWLKVQEVCQEDYDNVEVSILDVKKEELQYDFERNLYDISSSDFFKKVYVSEFDQYGGEPYGAILGLYNFENTTNDIIWLTGMGMVAKNSHAPFIASIDK-SFFGVKDLSEITHIKSFEALLEHPRYKEWNDFRNLDVAAYIGLTVGDFMLRQPYNPENNPVQYKLMEGFNEFVDYDKNESYLWGPASIHLVKNMMRSYDKTRWFQYIRGVESGGYVKNLVACVYDNKGILETKSPLNVLFADYMELSLANIGLIPFVSEKGTSNACFFSVNSAKKVEEFVDGFDSANSRLIANLSYTMCISRISHYIKCVIRDKIGSIVDVESIQKILSDWISEFVTTVYQPTPLEMARYPFRNVSIEVKTIPGKPGWYSCKINVIPHIQFEGMNTTMTIDTRLEPELFGTNN |
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General information:
TITO was launched using:
| RESULT:
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Template: 3J9O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -40852 for 2175 contacts (-18.8/contact) +
2D Compatibility (PS) -35777 + (NN) -1698 + (LL) 384
1D Compatibility (HY) -9600 + (ID) 2650
Total energy: -90193.0 ( -41.47 by residue)
QMean score : 0.040
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