Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEPLRVPPSAPARLVVLASGTGSLLRSLLDAA-VGDYPARVVAVGVDR-ECRAAEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLVDAGTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAAVAALATHGVTVVGRTATMGRKVTIG
1C2T Chain:B ((2-185))
-------------NIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFA--------------------
General information:
TITO was launched using:
RESULT:
Template:
1C2T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144536 for 1484 contacts (-97.4/contact) +
2D Compatibility (PS) -20762 + (NN) -13796 + (LL) 1804
1D Compatibility (HY) -10400 + (ID) 3350
Total energy: -191040.0 ( -128.73 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_1C2T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C2T-query.scw
PDB file :
Tito_Scwrl_1C2T.pdb
: